Scaffold GBIDBA_10006270

Overview

Basic Information

• Taxon OID: 3300001683
• Scaffold ID: GBIDBA_10006270
• Source Dataset Name: Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7817
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Guaymas Basin, Pacific Ocean

Source Dataset Sampling Location

• Location Name: Guyams Basin, Gulf of California, Pacific Ocean
• Coordinates
  • Lat. (^o): 27.015833
  • Long. (^o): -111.425
  • Depth (m): 1993

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022670	Metagenome	213	Y
F027660	Metagenome / Metatranscriptome	194	Y
F034353	Metagenome / Metatranscriptome	175	Y
F077810	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
GBIDBA_1000627012	F077810	GGTGG	MRVSLMRKLWKEKVTVPVLLRQADKILGQIEVKLNNKRSKNAK*
GBIDBA_1000627014	F034353	AGGAG	MKDMKDMIDTVLKNRSLTVFLAIVVVAMFFGFIGG*
GBIDBA_100062707	F027660	AGGAGG	MALTLNELKERIVQEAIDPCTLCEVLDITVEDILHEFEDKLIDKREEFQDVDDTD*
GBIDBA_100062709	F022670	N/A	MKTNKPHPIINKLKYAVRHSNLWRTKTITDKKKEQKKEGGHISEDITK*