Scaffold GBIDBA_10006259

Overview

Basic Information

• Taxon OID: 3300001683
• Scaffold ID: GBIDBA_10006259
• Source Dataset Name: Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12353
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (48.15%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Guaymas Basin, Pacific Ocean

Source Dataset Sampling Location

• Location Name: Guyams Basin, Gulf of California, Pacific Ocean
• Coordinates
  • Lat. (^o): 27.015833
  • Long. (^o): -111.425
  • Depth (m): 1993

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019751	Metagenome / Metatranscriptome	228	N
F049294	Metagenome / Metatranscriptome	147	Y
F050004	Metagenome / Metatranscriptome	146	Y
F083376	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
GBIDBA_1000625912	F050004	N/A	MDQKTWSQGDFTDSATYDLSGTVYDENTFTTVRDISSFTGTFRLIDPSSGDLIFSSDSNLTLNSNGTFTMKFSTGKTPVSNGNTKVRLLLKISGSRITCIGVNGSDELFLEFD*
GBIDBA_1000625914	F083376	GAGG	MIRIFTDKSAETVVESLDLGRVSLGETIKYTVFIKNTDTEWPVHNIKIENTNPELRFEVPEMLKADEVKEVHVFWTPKLDSRRPLRTEFKFSGDTYIG*
GBIDBA_1000625920	F049294	GGAG	MAGNLRYFGLGAYTGLIALWTAMGQIPLDLNTAIALLAPIALVVGADVVKHKNDK*
GBIDBA_100062599	F019751	N/A	MAGPRSPEKSKELHNYIYNQWMYFGLNAYQISNQINADTKLMSQFGKTSALGVRYHIVKIRQELENTLSEDAMDTYIGEFLRGMEGYDQDVASIDTLIKHENGDSLDDANKDTLIRLYRLRHEIKTDKFKMLQDSALPLQVKKLKRERDKYRPKALPKKEELEDNS*