Scaffold GBIDBA_10004520

Overview

Basic Information

• Taxon OID: 3300001683
• Scaffold ID: GBIDBA_10004520
• Source Dataset Name: Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10540
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (47.06%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Guaymas Basin, Pacific Ocean

Source Dataset Sampling Location

• Location Name: Guyams Basin, Gulf of California, Pacific Ocean
• Coordinates
  • Lat. (^o): 27.015833
  • Long. (^o): -111.425
  • Depth (m): 1993

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010943	Metagenome	297	Y
F016675	Metagenome / Metatranscriptome	245	Y
F084346	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
GBIDBA_1000452015	F016675	AGGAG	MKNFEVDYETTLPPWHIGHEKYEAEDLDTVKRKFRSKHEAARLMKVTEVLEDQYKSLFVSS*
GBIDBA_1000452017	F084346	AGAAGG	MTFQTIHPRYQVETSKEQSMLSNKQQAEDIYQKYVNQKIPCELFLNGQLQKEYKPLI*
GBIDBA_100045204	F010943	N/A	MTPNELHDYLLNLKNKDSLDPNIVEYKKTIREELRDYRSQHPITVSPSLPSPYYKDVVFYSFMEAKDKPKIGEHEYKRLKLSWSSLRKYNKDIEVRFCYNGDAEEGLWPSRKKWIDLCDEYGITMYPFHESFTGEEPNAWCIHRWYNLALWKDEHLNVLYLDADTWINGDIGLVFDIYKRDPVYGREELGFRHDPNLGVCGEDPRFYLDLIDASILAQGGVTEVQKYCLGVILLNHSTHKLFTPEILEGYTDLLKRIHTFKVFYSIPNYRIMDEFAFWVLLSRWSLRTSLFGNQDVSQTFLEEKHSVHFNPIVLHYTTKDEEKFADWAPEFFCLSRNIEDRENSDLAAGGIYNVSPMMREELAMSMW*