Scaffold SAHD_10025190

Overview

Basic Information

• Taxon OID: 3300001682
• Scaffold ID: SAHD_10025190
• Source Dataset Name: Cattle waste upflow reactor
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5826
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (36.36%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Nutrient Removal → Dissolved Organics (Anaerobic) → Activated Sludge → Activated Sludge → Activated Sludge Microbial Communities From The University Of Illinois, Usa, From Bioreactors Seeded With Cattle Waste

Source Dataset Sampling Location

• Location Name: USA: University of Illionis
• Coordinates
  • Lat. (^o): 40.103885
  • Long. (^o): -88.225087

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039153	Metagenome / Metatranscriptome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
SAHD_100251905	F039153	N/A	MKYTVSSSEKSKMYNTEVIFFNNSKQASRLNVSPLHKEIKQWAKSQGYTPKLYLRSVAIECNNPDLPKEYELLVVDLIQIIANGQAYLVAIDTLGPSENNLHFILEEHAKLRKAIYVTAECLDDVICEIQDNEHNHKGDPCVPDIKSRRSFQGDYSILFSPENLTWKTARYERA*