Scaffold Abe_10152042

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Abe_10152042

Scaffold Abe_10152042

Overview

Basic Information
Taxon OID	3300001681 Open in IMG/M
Scaffold ID	Abe_10152042 Open in IMG/M
Source Dataset Name	Black smokers hydrothermal plume microbial communities from Abe, Lau Basin, Pacific Ocean - IDBA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1115
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From Abe, Lau Basin, Pacific Ocean

Source Dataset Sampling Location
Location Name	Abe, ELSC, Pacific Ocean
Coordinates	Lat. (^o)	-20.111307	Long. (^o)	-176.989014	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F082806	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Abe_101520421	F082806	N/A	MAYDLKSVFYLDTSADIEASTAGGGSAQLDLSAYIDPIARGRTKGTGLAVYKAHFVTS

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