Scaffold KiloMoana_10017439

Overview

Basic Information

• Taxon OID: 3300001680
• Scaffold ID: KiloMoana_10017439
• Source Dataset Name: Black smokers hydrothermal plume microbial communities from Kilo Moana, Pacific Ocean
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3502
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From Kilo Moana, Pacific Ocean

Source Dataset Sampling Location

• Location Name: Kilo Moana, Lau Basin, Pacific Ocean
• Coordinates
  • Lat. (^o): -20.054108
  • Long. (^o): -176.133522
  • Depth (m): 2600

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015490	Metagenome	254	Y
F016735	Metagenome	245	Y
F042083	Metagenome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
KiloMoana_100174391	F015490	N/A	MSCSPDHTSATDGVSVFKFAGDGVSVQQIFGGPAWSNQAAGPLDGNNGMPVVVENSAGIFDIIPGNQIDFSVSCTTAETVDVAVSITYAP*
KiloMoana_100174394	F016735	GAGG	MSDELFALVWVLSFGLYLVIYTYWIPLRTQKKIESWLMSEESDETLLASLGVITNQIRETALGDFEEFMIPQGRKAAIDFWNGAMGNAAKKLGDTEEGSQLSLLHSMTEELKDQPWYVQAAASKLIPVIQKAADNQGKEKVTKLVHGKFGFD*
KiloMoana_100174397	F042083	AGGAG	MARRRMAIPHPSITGMASGLAVANYLNQGTSVGIGTLKTGGVIKDTLDGNLNSAFSSLSKNAVDLATSPGGKAVLSSAIVLATAGGLARKWFPSVKLGGTKLYFKI*