Scaffold JGI12053J15887_10129688

Overview

Basic Information

• Taxon OID: 3300001661
• Scaffold ID: JGI12053J15887_10129688
• Source Dataset Name: Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1341
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → Gemmatimonas aurantiaca (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: El Dorado National Forest, Georgetown, California, USA
• Coordinates
  • Lat. (^o): 38.88
  • Long. (^o): -120.64

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044624	Metagenome / Metatranscriptome	154	N

Sequences

Protein ID	Family	RBS	Sequence
JGI12053J15887_101296883	F044624	N/A	MIHSHPDGQRCWYYFPGTRVASSDAHSFARQPYPVDAIMCGNRVVWLSRDMVEQQVRLSDPDGHPATPPPQQRGNRVHAGAAAREGQD*