Scaffold JGI12053J15887_10000750

Overview

Basic Information

• Taxon OID: 3300001661
• Scaffold ID: JGI12053J15887_10000750
• Source Dataset Name: Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13932
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (86.36%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: El Dorado National Forest, Georgetown, California, USA
• Coordinates
  • Lat. (^o): 38.88
  • Long. (^o): -120.64

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044063	Metagenome / Metatranscriptome	155	N
F047322	Metagenome / Metatranscriptome	150	N
F052710	Metagenome / Metatranscriptome	142	N
F101920	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
JGI12053J15887_1000075011	F101920	AGG	MSKAEEAFSRAAMCAEQARSAQDEETRTFFNRLRDSWVRVANNYQIAESLATDVAAPPHPAGMPMDGGPVEAQPER*
JGI12053J15887_1000075012	F047322	GGAG	MDGKTSALLKDSQRETPSRTPRLLNAAAWLETLTALEEEFKSILAEKTASTRQAADKRRDS*
JGI12053J15887_100007502	F052710	GGAG	MGGKYSAEWWEKIAGLNRDLPAQDPVSVVDHLIQATAHGARSPAKNVKRPGQGAAEPKHERSPAD*
JGI12053J15887_100007504	F044063	GGCGG	VALIQFVVLKRKGNWAVKSNDQERSFSAQLEAMHAAIQLANECGKNGKPSVVLLQTAKNQFETIWTYGESPFPPSKSDLPSLPQAS*