Scaffold JGI20245J16306_1000505

Overview

Basic Information

• Taxon OID: 3300001634
• Scaffold ID: JGI20245J16306_1000505
• Source Dataset Name: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3030
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Source Dataset Sampling Location

• Location Name: Harvard Forest LTER, Petersham, MA, USA
• Coordinates
  • Lat. (^o): 42.532967
  • Long. (^o): -72.209488
  • Depth (m): 0 to .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F102010	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI20245J16306_10005052	F102010	GGGGG	VTTVRIVFALRSLRAARAPDGTDVPDWRLHQRLVVLADDAGHRAVPLWLRVFGRKELLSRVARLSRMGRPAADAEVASGLLETAVRLLRTAGTEVSTVDIEPASDDVPELRWDTVTARVGLTAATGTRPVTVSAEYGLALAAVAGAPVRVADEVMDRLAVXVPGEDMLAPFLPLADARPPGRLGHPRRFEPRNMAFTGGLDYWELAGSFSDDGQPAGQDYSCAAADQSAVLAATVPEPAGSAVLVQAIYAEDYRGRTVTFRGQLRATGIVGQAGLHLAVSGPPDGPVGRPLLDHGSSLSAPGSADWTWHEVTVAVPGEAIAIRFGISLAGRGRIELRGAELTPAPPGTPA*