Basic Information | |
---|---|
Taxon OID | 3300001605 Open in IMG/M |
Scaffold ID | Draft_10073194 Open in IMG/M |
Source Dataset Name | Tailings pond microbial communities from Northern Alberta - Syncrude Mildred Lake Settling Basin |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | McGill University |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 2663 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (88.89%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
---|
Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Fort McMurray in northeastern Alberta, Canada | |||||||
Coordinates | Lat. (o) | 57.01116 | Long. (o) | -111.6 | Alt. (m) | Depth (m) | 0 to .1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000403 | Metagenome / Metatranscriptome | 1177 | Y |
F012452 | Metagenome | 280 | Y |
F025683 | Metagenome / Metatranscriptome | 200 | Y |
F105039 | Metagenome | 100 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Draft_100731942 | F025683 | GGAG | MLLDLLDPETLGRLVGVIALMILGGAYGYAKGFKEGKREGMARRKAISRHMSNKVAD* |
Draft_100731943 | F012452 | AGGTGG | MAFLDNYEGNKERTDRWNATYPDGRLQAHIVEFNAEKGYILVQAKAWRNQSEIEPAGIDYAYGFIAAYNPNMKRWFVEDTTTSALMRVMALVMGGTEKATRETMEQVEKLSTKVATADVKADYDYWTTKHGDVPSYATAAEAEQSGIPSLGSSIDEIANQLGGQLVEEKPRCDHGTRVWKTGESAKTGKAWGGYFCTEKSKANQCDPVWYQLGSTGQWVVRLP* |
Draft_100731944 | F000403 | N/A | MSDYMEMIDLKTMTGKLLYNGEVIAEYKVDQCDKCSQITKFDSFGYQKGYDKHEKVIWFCGGCR* |
Draft_100731945 | F105039 | GGTGG | VKIKLTPNEMCVCMVAAVKITSDKGQLLDLPRSYNNSSFMIYLSELAESIGSEWAVAKYFGLPFDPFEDKGKRKADVGAGIEVRWTKYELGQLIVYEYDRASDIAVLVTGEAPNYYIAGWIPVTMAQKPRYRHTKQPTWWVTQINLQPIENLRKSTYGHSAI* |
⦗Top⦘ |