Scaffold EMG_10028416

Overview

Basic Information

• Taxon OID: 3300001598
• Scaffold ID: EMG_10028416
• Source Dataset Name: Elephant fecal microbiome from Asian Elephant in Hamburg Zoo, Germany
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6136
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae → unclassified Podoviridae → crAss-like viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Asian Elephant Fecal → Asian Elephant Fecal Microbial Communities From Hamburg Zoo, Germany

Source Dataset Sampling Location

• Location Name: Hagenbeck zoo/Hamburg, Germany
• Coordinates
  • Lat. (^o): 53.595256
  • Long. (^o): 9.941572

Associated Families

Family	Category	Number of Sequences	3D Structure?
F072445	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
EMG_100284163	F072445	N/A	MASVASLVSSNGLQMDFINYDNYKENNKEFLRGDLWELKVTAPPKIVYYPGDDIFNKRLQSVQVGLDYSVIGIEKQMRGNYAIYQQADQSTYGTLTLTFTDREDQAITYFAQDWRNKVADPDCKYSFRKDDLVMDCELHITNSSRIDVRVLKFFNCQITDAQYDESGAPQAGVDRADVTIGLRFEHYSRSFENI*