Scaffold JGI24005J15628_10105667

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI24005J15628_10105667

Scaffold JGI24005J15628_10105667

Overview

Basic Information
Taxon OID	3300001589 Open in IMG/M
Scaffold ID	JGI24005J15628_10105667 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-40
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	936
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	50.0	Long. (^o)	-145.0	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003531	Metagenome	481	Y
F005656	Metagenome	394	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24005J15628_101056672	F003531	GGAG	MKRKTWTENETELARQLLXXHSYATVGKMLHRSKNSVIGQFYREKVLNGYVPPSDSKYTHKKERNIHVNN*
JGI24005J15628_101056674	F005656	N/A	MKLKDLLNIQQIVEKRAIPSDVLEFDSTHYSRSKDMTVDILDLHLTHAIRILNNYLTDDVYPRYSNRQEINNHLDVIKDNLDDIKEVVNK*

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