Scaffold JGI24005J15628_10044855

Overview

Basic Information

• Taxon OID: 3300001589
• Scaffold ID: JGI24005J15628_10044855
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1753
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured Mediterranean phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035491	Metagenome	172	N
F053631	Metagenome	141	Y
F089429	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24005J15628_100448551	F089429	GGAG	MKAKNLDIYSIFSRTYKKKMFPFMDFLEIGRLKKVKTIRQISNVYQFPIHKYYNKLKKEG
JGI24005J15628_100448552	F053631	GGAGG	MIRAIYFALCFAIALFGLFVITQINLTIGLSIFALFIVKFFLMLPQTMES*
JGI24005J15628_100448553	F035491	AGGAGG	MNLRTKATWELRQIVKALSLPISSFLNTDEDVERLEQAQIVLYERRLKNSQPIKMEVK*