Scaffold JGI24005J15628

Basic Information
Taxon OID	3300001589 Open in IMG/M
Scaffold ID	JGI24005J15628_10026604 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-40
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300001589 Open in IMG/M

Scaffold ID

JGI24005J15628_10026604 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - LP-40

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2443
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

2443

Total Scaffold Genes

4 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	50.0	Long. (^o)	-145.0	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

50.0

Long. (^o)

-145.0

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017050	Metagenome / Metatranscriptome	243	N
F018269	Metagenome	236	N
F085688	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24005J15628_100266041	F085688	N/A	MEDDMTILGCITKYNASDIRPYVESIEQTGYKGRKVMLVYDVPPETIDYLKSKGWDLFGGELQQHIILQRFRDLYKLLGSEIKGTVIWTDVKDVIFQKDPSDWIDLNMEEDILSFSECIKFKDDPWACVNAGTSFPMEWEWLQNETSYCAGTIVGDACYLRDLFIDIYRWSLTTANQEQLSDQAAYNVLINLHHISDCIQKVNQEEGFVTQLGSVLVKKDEFKDVLLEPTPIVDENYIVKNQNGEPF
JGI24005J15628_100266042	F017050	N/A	MNKLISGYWWAWKEIEAGKKSMQTLRKYYPDADLFINVDYEGDVDGYTKVGKELNATVTRNNFQLGYCGNFGDRDIGYDYWSKEKAVEWLRGVYAACTKTDSKYMMLFEEDDFVLKNISILDTDFSIAIHPTSPSPVRMRPNRIPTQFLDYSKEIGGIGDCPGYASGGGTIFNREHYMDSYERILDKFTDVYDEFCKINKIFGWEDFLFQYIFMLGGYEVTQNHDLCELWEVPNFEGFEILTGCKDPNLITL*
JGI24005J15628_100266043	F018269	GGTGG	MKIGINLVGVSYNNAISGGRLRNYEDAIENFHTYIVEPFREKGYNVQFYLYSYENEKQDKIINDYRPCMKSQFVKPDYNKLGGGAQVSEGYKVMSVSYLNSLEQLKNQDLDLIISTRYDIKFLKNPFEEYNFDFDKMNFLWREPELKDLPLVNDTFLVFPYKMLDNVIDSIIEMEENPPQGKNIAMHNWYLPMVNQVGEDKVQWVDDEFRTAIQNELYILTRKT*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI24005J15628_10026604

Overview

Ecosystem & Geography

Associated Families

Sequences