Scaffold JGI24005J15628_10017645

Overview

Basic Information

• Taxon OID: 3300001589
• Scaffold ID: JGI24005J15628_10017645
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3147
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010910	Metagenome / Metatranscriptome	297	Y
F018906	Metagenome	232	Y
F019646	Metagenome	228	Y
F093848	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24005J15628_100176451	F019646	N/A	NTSKNFEIVYSSDCCGASVHSDADICPRCYEHCEVIEDRTDYDCSEAVHFQASLDFYGAG
JGI24005J15628_1001764510	F093848	GGA	MNELMQDSLYDTLDKLSTRLVQLYYVTCWELDDQDGM
JGI24005J15628_100176454	F018906	AGGAG	MKTKVNPLKXNGTRFNSQAHKEQGRYVKHYYFSNGLGASVALHDGTYGGQHGYFELAILKYQHGTDPYTTNEIIYXTXINHDLGCVDVIGWLDFHEVASKLQEIRNYNTGDYNYNVK*
JGI24005J15628_100176457	F010910	GGAG	MLTIYTIFGIMVGFEGYDNGKVYFGVYTPNCEYGYVMTAEEIYLDTIYEIR*