Scaffold JGI24005J15628_10011613

Overview

Basic Information

• Taxon OID: 3300001589
• Scaffold ID: JGI24005J15628_10011613
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4023
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039351	Metagenome	164	N
F073764	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24005J15628_100116135	F039351	AGCAG	MARIMVTGDSWSAGEWDPTLTPEETRAFAEKYSMSRYLRDLGHEVAHAANPGWGDFVSLSCLMSHEIGFDFVVYVKTCATRDFKHLTPEHHRAYTTTDLFEKINLVKELEYKVLDQYKHKLILLGGIEKIEPDFNCYLKIPSITEFFYPDFEDTTIFGDYTHFEKYSDNDKRGAMKLWELWEYKHNFWKDHPEYFASATDQVHPNRKATKALAEFIHNHIS*
JGI24005J15628_100116136	F073764	N/A	EAIRESINELKKDIKSEYDIPVATITKISTIVRKENLQEEEEKWEEIKDIVAACL*