Scaffold JGI24005J15628_10005428

Overview

Basic Information

• Taxon OID: 3300001589
• Scaffold ID: JGI24005J15628_10005428
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6219
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → unclassified Legionellales → Legionellales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035114	Metagenome	173	Y
F056077	Metagenome / Metatranscriptome	138	Y
F070047	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24005J15628_1000542811	F056077	AGGAG	MAVNTDHTGVSNVFNAHGKALHLTKLAKTNITQAELDAALRFIALTATIVAVGDDTTGGFNAGASDAVHVLSEGAAPAAVSNFGVGSTGITTTVVSVFEV*
JGI24005J15628_100054282	F070047	GAG	MYTTVDMRKLQDRLDSMTEVAQEVTVEAAEIEAAPAVEETSIENANGDAELAELKDMLGRSGVMGFSA*
JGI24005J15628_100054284	F035114	AGG	MTASIINLATGQTLHQRIDRLLDFTPKIKIQKLEHGTVKVNDIVIDNHYGSWKCKDECFYRRKSAVGYALCIINNDTKTANNIKSLDSKLQKVKTDIDFYHYHLRRSDQFKKLTMSNRISSDMPVLHNIDAALTQLLKTISI*