NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24005J15628_10005365

Scaffold JGI24005J15628_10005365


Overview

Basic Information
Taxon OID3300001589 Open in IMG/M
Scaffold IDJGI24005J15628_10005365 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6267
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028039Metagenome / Metatranscriptome193Y
F041493Metagenome / Metatranscriptome160Y
F042628Metagenome158Y
F086164Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
JGI24005J15628_100053652F041493AGGAGMTTTQSQDYYTKMIDNNEDHLYTTIFDAVSGDPFRVKTDRVGHYLSKVKKESRLSGDKLIFSGDWVKAFVKTKEEIIGSPSSSKIDRVAPVSQVKAGKRRRGRRGKKK*
JGI24005J15628_100053653F028039AGGAGMTILLDRWETIVKEMKLENRWANILEKYLKDNNLSELPEPEWSDDPTMAYIYLPAHSLNGKESRMDKTKARMFPESIVRYLEKGGLMKLPAKVEVSKIEEQLPEMETEKPIKSQKIKLPKIGE*
JGI24005J15628_100053655F086164AGGAGMAFGHEKLAVDATVRALTVPVDVNFAQVTVETAAIRYRLDGTDPATAVGVLISAGDSFAIYGVDTLRNIKMVEATSTDSVINVSYGTANTGVHGVIITGTA*
JGI24005J15628_100053656F042628AGGAMGKYNKSNKNNIFKEEPEISISEHTVIKNGRKMKMVIPDGKVGYGDVESHAQMAGDLATKHSDDTKAGERVYEEVRKHRDSRDRGSTVEQNKINMAXAKMQSRMPVLNTFQITDNKGEVIATEILFMKQEPSGLTRPLKIRVDAQTGKAQEVPL*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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