Scaffold JGI12211J15759_100226

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI12211J15759_100226

Scaffold JGI12211J15759_100226

Overview

Basic Information
Taxon OID	3300001570 Open in IMG/M
Scaffold ID	JGI12211J15759_100226 Open in IMG/M
Source Dataset Name	Marine microbial communities from the Deep Pacific Ocean - MP2016
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3521
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (44.44%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	East of Hawaii, North Pacific Ocean
Coordinates	Lat. (^o)	18.04	Long. (^o)	-133.26	Alt. (m)		Depth (m)	4004.03
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F071317	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
JGI12211J15759_1002267	F071317	N/A	MLKKITAVGLITLFAGVTAAPLIHLDECNMPCCAGLATSCCDMDQEVACPTMSDCGSSIFVLIVSGPFHKSELKSSDSISQRFVTDLDIFKIETNYIACFGNYDPGPMASLNLPLLI*

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