Scaffold Draft_10006970

Overview

Basic Information

• Taxon OID: 3300001567
• Scaffold ID: Draft_10006970
• Source Dataset Name: Hydrocarbon resource environments microbial communities from Canada and USA - Toluene degrading community from Alberta, Canada
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: McGill University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9219
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Candidatus Methanofastidiosa (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location

• Location Name: Northern Alberta, Canada
• Coordinates
  • Lat. (^o): 54.0
  • Long. (^o): -114.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037746	Metagenome / Metatranscriptome	167	N
F070633	Metagenome / Metatranscriptome	123	N
F074119	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Draft_100069701	F070633	N/A	LGGXDTGLRDRAKXRLVLDVSHSQSDEGFVYSVRQHLPLGPKKCTGGFNLVVVPLSDGILTSIDRDNFNVAVDTEGRLILTRLDRKIQLVFDYDKGFMTGVLGGVLYDTFEIPKHEGTDYHG*
Draft_100069702	F037746	GGAGG	MPVDIEWAKANDTVGQEFESNYIPGTTDKDLEDARVLMEKLLKKYGSRDALEADERDWAKYRKAMYVVASRSKDTMDRANKAREELIKRKNLLSQFFDNNREILFKLPEWARINLRKYTDYGLLIDQEYLWQALGELGEDGLAEHLLNVANYIYIDTGFMGGVRGDSEALKTGPVRSIYHRSTCKAQKTVHPSCNSGCNKV*
Draft_100069704	F074119	GAGG	MSEIQVFEVLAKILPYLVSLGIGTFAGWELVKTKIHELAEFFNVVDEALYDDAVTEKEFRAIWEKGRALFQWSFVAKKGEA*