NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Draft_10005285

Scaffold Draft_10005285


Overview

Basic Information
Taxon OID3300001567 Open in IMG/M
Scaffold IDDraft_10005285 Open in IMG/M
Source Dataset NameHydrocarbon resource environments microbial communities from Canada and USA - Toluene degrading community from Alberta, Canada
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMcGill University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11919
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location
Location NameNorthern Alberta, Canada
CoordinatesLat. (o)54.0Long. (o)-114.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F069434Metagenome / Metatranscriptome124Y
F070634Metagenome123N

Sequences

Protein IDFamilyRBSSequence
Draft_100052853F069434AGGAGGMNHIFDKTTCWNIFDHSDTPEPLWDPQRQGKHSEARRAAIRLTVKHPLRILPVIISCRRCGRS*
Draft_100052854F070634AGGAMTGNILKESSVRKGRRIVSVLEFDTGEIVLYIDDTRTGVQEDIALREYINAYEVYYDFDQGWMINGEEIPYRDSF*

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