Scaffold Draft_10005260

Overview

Basic Information

• Taxon OID: 3300001567
• Scaffold ID: Draft_10005260
• Source Dataset Name: Hydrocarbon resource environments microbial communities from Canada and USA - Toluene degrading community from Alberta, Canada
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: McGill University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11969
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (73.91%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location

• Location Name: Northern Alberta, Canada
• Coordinates
  • Lat. (^o): 54.0
  • Long. (^o): -114.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F064746	Metagenome / Metatranscriptome	128	N
F091989	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Draft_1000526015	F064746	GGAG	MNKIIWIALILLLGVFAIGGMSSTNGNDGAKNVTIDGYTFEGDFDDKWTNGYGDTETYKPANLEDIQFGIPDGAYDWTGIENYHAFYYDSGEPSGSITKYGWANIFVLKPNEDMVNVLKSATRLLINPRNHRNAVVAGDLTEKYIEYNGRQAYLVEIKEELMDGFVDYRDYAAIAFFLDDGKVCVIDAFTTDNFGMSAWDIIDSITVTP*
Draft_100052605	F091989	GGA	MTLSAYARSIINVAKVNGYASDASKAGDALIRPFGELDDQKTTLISLQVSTMALCWIDANGKAVPFDSAEFNAVQKEIAALQAKIDHNAAILDKLDAKVAELGLSEFSLAKLKGEIEKRRGQIAQIRAEENDSLRSKWESVVSLGGNRATYDKLPEVIDARAKAAEKIAPIESEIKALNGQIRSLESILSKFTR*