Scaffold Draft_10003477

Overview

Basic Information

• Taxon OID: 3300001567
• Scaffold ID: Draft_10003477
• Source Dataset Name: Hydrocarbon resource environments microbial communities from Canada and USA - Toluene degrading community from Alberta, Canada
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: McGill University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17272
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (54.55%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location

• Location Name: Northern Alberta, Canada
• Coordinates
  • Lat. (^o): 54.0
  • Long. (^o): -114.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035532	Metagenome / Metatranscriptome	172	N
F043670	Metagenome	156	N

Sequences

Protein ID	Family	RBS	Sequence
Draft_1000347711	F035532	GAGG	MSFDPISFLANVERIFSAATGLSDVKTWSRPTKFSTSFETPEVAIEMIAGNIDSISLSYPNKQIEFYVRFVIFEEQTSSTSKIGAIYSGIIDTVRSNPDLKNKSGSATCDYFGTFYGRNISFDLAATERNGVSVNAMRIDVPCLVRDT*
Draft_1000347720	F043670	GGA	MDIIELVRGDKNPYLGKFRIEEYDLERDKVIRGSWQKNLIANKLKAALADVLTGDYDANKHVIGKLAVGAGSTAVAATDLALTTQLGSLKSYVPGSLHNNTYSNKSEATYYFDYTEADYYGTWAEIGLYAANGTDLLTHSLISPTKNFSNTKTMTVYYVIEF*