Scaffold JGI20215J15232_1034798

Overview

Basic Information

• Taxon OID: 3300001547
• Scaffold ID: JGI20215J15232_1034798
• Source Dataset Name: Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site C1 Bulk
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 666
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Wetland → Microbial Community Impact On Carbon Sequestration In Managed Wetland Carbon Farming

Source Dataset Sampling Location

• Location Name: Twitchell Island, Sacramento and San Joaquin Delta, California, USA
• Coordinates
  • Lat. (^o): 38.1075
  • Long. (^o): -121.6497
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045771	Metagenome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI20215J15232_10347981	F045771	GAGG	MTRRIFLDTEWTAPPWSDRCELMWIGLADEDMRSWYGISSEVVIDPSTNAFVSGAFRLIDPGEPRLSRAQLAAAVMDFCGAVDEFWVWIPTLERFSEWSGLADKAAEVYAKFRDVDLQMLRALLNPWPAGWPNRLHDLNAA