Scaffold JGI12659J15293_10000009

Overview

Basic Information

• Taxon OID: 3300001546
• Scaffold ID: JGI12659J15293_10000009
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 56533
• Total Scaffold Genes: 89
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 61 (68.54%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013828	Metagenome / Metatranscriptome	268	Y
F105590	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12659J15293_1000000928	F013828	GAG	MSTWRYAVALPFLISLSGCIETTTYVSPSVSGTVIDAASQKPIQGAAISVDGHPGLFAQTNSDGQFVLVPATRKTRIFVLAPYESLAPDGTLVVAADGYASREIVVKGSTNSLLVSLNRVR*
JGI12659J15293_1000000936	F105590	GAGG	LTDGTDGKAPSVWIRAVGIIGAVYLVVYGAIGLWRDDLLVSLSKSSGNGVHLHGPLAWLCFAGFVMLSIGIAGLVAPEFGDGEYDIAARRRRFGPILLVGLGFYVGTTVIAGLRS*