NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI20163J15578_10660870

Scaffold JGI20163J15578_10660870


Overview

Basic Information
Taxon OID3300001544 Open in IMG/M
Scaffold IDJGI20163J15578_10660870 Open in IMG/M
Source Dataset NameCubitermes ugandensis P1 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)624
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location NameKakamega Forest, Kenya
CoordinatesLat. (o)0.2917Long. (o)34.856Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004181Metagenome449Y
F011002Metagenome296Y

Sequences

Protein IDFamilyRBSSequence
JGI20163J15578_106608701F011002N/AMEKSKERRIYEGHLESKERFAIKKYLIIGKKKDMQVLSHTFTYFST*
JGI20163J15578_106608702F004181N/ADALKEKVNRIIRENRHFTISEVYEKCPEVSRALVYQTVTKHLQYRKICARWARRPSGTRRE*

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