Scaffold A1565W1_10301722

Overview

Basic Information

• Taxon OID: 3300001536
• Scaffold ID: A1565W1_10301722
• Source Dataset Name: Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A15-65cm-8A)- 1 week illumina
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Tennessee
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 831
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost And Active Layer Microbial Communities From Mcgill Arctic Research Station (Mars)

Source Dataset Sampling Location

• Location Name: Axel Heiberg Island, Nunavut, Canada
• Coordinates
  • Lat. (^o): 79.26
  • Long. (^o): -90.46

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015568	Metagenome / Metatranscriptome	253	Y
F021422	Metagenome / Metatranscriptome	219	Y

Sequences

Protein ID	Family	RBS	Sequence
A1565W1_103017221	F015568	AGGA	MTKKNPFDRLTSLGEEVLGKASQNPAAARFIQSATQVKDHVDDLSKRVRGLEAMEKRLAQLERRLAKIEYAAKKKPPPPAARKTTAPKKGS*
A1565W1_103017222	F021422	N/A	LLGQIASSPGEWQLMWSVDGIWGHWPGTLAARDGSTFTGTQAVDFYVTPGKPWTLVTLARECDFGALPGWDGPGHPTLPCPRSNEVGNATGDDYPGAIAITFKGAALGKHVSNASTAGSSCPPSNAHGCYQLTYTVSRVR*