Scaffold MLSed_10116407

Overview

Basic Information

• Taxon OID: 3300001533
• Scaffold ID: MLSed_10116407
• Source Dataset Name: Benthic freshwater microbial communities from British Columbia, Canada
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1206
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Benthic → Benthic Freshwater Sediment Microbial Communities From British Columbia, Canada

Source Dataset Sampling Location

• Location Name: British Columbia, Canada
• Coordinates
  • Lat. (^o): 49.283333
  • Long. (^o): -119.583333

Associated Families

Family	Category	Number of Sequences	3D Structure?
F081085	Metagenome / Metatranscriptome	114	Y
F103043	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
MLSed_101164072	F081085	GGCGG	MIDDEFIADNEFFVDDLYDMDEGQLRKEIEQYARLARRYPHPTTRNQMAYQFAYLRHGEAMKILEARSNA*
MLSed_101164073	F103043	AGGTGG	VKNSKETIVLFTLAVANAPLTIGNLAFRAGVSYNTAKKIVEADERVTSIGKHPTTYYMAKPDILDEQVIRLSGDKPIEGWVAWFEKVSPKLAQFVRIDRTASSDDVHKQGIVLEALGTNLIIAGRELQKHADQPDWFTLIGGNEND*