Scaffold MLSed_10065009

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold MLSed_10065009

Scaffold MLSed_10065009

Overview

Basic Information
Taxon OID	3300001533 Open in IMG/M
Scaffold ID	MLSed_10065009 Open in IMG/M
Source Dataset Name	Benthic freshwater microbial communities from British Columbia, Canada
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1884
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Benthic → Benthic Freshwater Sediment Microbial Communities From British Columbia, Canada

Source Dataset Sampling Location
Location Name	British Columbia, Canada
Coordinates	Lat. (^o)	49.283333	Long. (^o)	-119.583333	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F025994	Metagenome / Metatranscriptome	199	Y
F033789	Metagenome / Metatranscriptome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
MLSed_100650093	F025994	GAGG	MSDEEIMKAIHGAIRQHELRVAFWSGLLGAALLAGT*
MLSed_100650094	F033789	AGG	MLSDLPSPFYIGSIKVWPCASRPGFQWFIAYEGKPYWFKNRNDAILFAKDRSSIDDPEGLCD*

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