Scaffold MLSed_10040933

Overview

Basic Information

• Taxon OID: 3300001533
• Scaffold ID: MLSed_10040933
• Source Dataset Name: Benthic freshwater microbial communities from British Columbia, Canada
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2657
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Benthic → Benthic Freshwater Sediment Microbial Communities From British Columbia, Canada

Source Dataset Sampling Location

• Location Name: British Columbia, Canada
• Coordinates
  • Lat. (^o): 49.283333
  • Long. (^o): -119.583333

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006543	Metagenome / Metatranscriptome	370	Y
F010451	Metagenome / Metatranscriptome	303	Y

Sequences

Protein ID	Family	RBS	Sequence
MLSed_100409331	F010451	AGGAG	MKVANGNDKLGKGCLVVSRPVGDTCPSTCDFLGAGCYAEQTEKMYPNVRPAGMQNLITERGRIRSMILDAMRQGKSIRWHERGDWFLNGELDLDYVANVTWACESI
MLSed_100409333	F006543	GGAGG	MNKYSFVVDIVASDLDREVVVDSISECLRDALPADVHANVKAGEIKSFSEQGYKVWRARVTGVTAEAAGDAANPKAKAKELVEA*