NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold MLSed_10020311

Scaffold MLSed_10020311


Overview

Basic Information
Taxon OID3300001533 Open in IMG/M
Scaffold IDMLSed_10020311 Open in IMG/M
Source Dataset NameBenthic freshwater microbial communities from British Columbia, Canada
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4428
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Benthic → Benthic Freshwater Sediment Microbial Communities From British Columbia, Canada

Source Dataset Sampling Location
Location NameBritish Columbia, Canada
CoordinatesLat. (o)49.283333Long. (o)-119.583333Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F074772Metagenome / Metatranscriptome119Y
F095349Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
MLSed_100203111F095349N/AMSAQVATSCEAISDQFQRETGRIALGTHRLGLYKDPYLRFVTQSAFPDNMGAIVTNTIAQRTVAVGNGWTDIGITGGVEVCEATQSDVTNSCLAPTKKVSYAFDQKTFKLRHQAIESDWICLEDVRTSAFPIDDVNNYIKILADNVNKEWIERYDNDYYEAVTKISVEPGLAEETGTSFGSIPAPTSILTVGVLRELYDRLYQNNAGDDGDAVTDDGSPVFNVFAERATIENLIKLNDDVRQDIRYSDRVNDLLGPNGSSLLPRKAYAGYVFHSRPFPKRFNDNGSGGYTEVAPYVAASATKGTKYIINPAYKAAKYTSTVIFHPKAVEWLVPNPNLKVGKLVYDAQNYRGDFRWVNEWDRNCNPDKNSGYWRAKMACAAKQVFPEFGFYILHLRCNLAGDLVPCDSGSGYGYLA*
MLSed_100203114F074772AGGAMDWTDQDAREWAKTWAMPHMQKGLKFISKRVRPKRSSSPVAQGFDLSPVFIKSAGFYEGSQEVMDLIEVLGQGQVNKPKFDLPEPFSHITSEETN*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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