NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold MLSed_10001077

Scaffold MLSed_10001077


Overview

Basic Information
Taxon OID3300001533 Open in IMG/M
Scaffold IDMLSed_10001077 Open in IMG/M
Source Dataset NameBenthic freshwater microbial communities from British Columbia, Canada
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27527
Total Scaffold Genes67 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (8.96%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Benthic → Benthic Freshwater Sediment Microbial Communities From British Columbia, Canada

Source Dataset Sampling Location
Location NameBritish Columbia, Canada
CoordinatesLat. (o)49.283333Long. (o)-119.583333Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011397Metagenome / Metatranscriptome291Y
F022996Metagenome212Y

Sequences

Protein IDFamilyRBSSequence
MLSed_1000107722F011397N/AMKEFELLKRTYPISQFDRICDGYIYILDNTTPEKRKEWKINTKELQRIIKEGEKYIYQVAKDNGVFKAMYLSFNNYKIIRKHIFKLEDE*
MLSed_1000107728F022996N/AMETIVRFNVKKMKEDIKIKVEEQKFLKNQRKTVHIIGERKLSHWEATCNHQNNREDLRIMYAVYGLNRGKTFNEIENHYLEENHPLKQYQKTIDRVTEEYMEIVEVEI*

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