Scaffold JGI24004J15324_10035061

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold JGI24004J15324_10035061

Scaffold JGI24004J15324_10035061

Overview

Basic Information
Taxon OID	3300001472 Open in IMG/M
Scaffold ID	JGI24004J15324_10035061 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-32
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1595
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	49.2833	Long. (^o)	-134.6666	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F081783	Metagenome	114	N
F098061	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24004J15324_100350612	F081783	AGGAG	MLKWIRDKYDDWKFEKEFQAKKKEIMKVDPFIYNIPDTNEINIGGIVKNDNSQN*
JGI24004J15324_100350613	F098061	AGGTGG	MTTRRIKKKLRTFFEEKELTLKETHFILGCLKAQQKHPQLTSRQWQIVCEIEQRYK*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.