Scaffold JGI24004J15324_10011160

Overview

Basic Information

• Taxon OID: 3300001472
• Scaffold ID: JGI24004J15324_10011160
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-32
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3240
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.2833
  • Long. (^o): -134.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011191	Metagenome	294	Y
F054421	Metagenome / Metatranscriptome	140	N
F083263	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24004J15324_1001116010	F011191	AGGAG	MKAYFINAKDELIVEVNCKDYYHKKELINCSYIELYPYPVNGNDMWTDEEANLRESNYLFQLDDIIVSGNAIIMSYDDEGDSADVKDLTIEDLKSRVKFKGKRAIDHSKLKFEV
JGI24004J15324_100111606	F054421	AGGAG	MNITKMTSTVADRVREELKIYLSQFTSTHEIEGIKVELGNCSYDEAMAQYQLKIKVDGVETREQKALQMYAQLDGLDLDKXHPYLALVEYHPKKSKYPYIYLDSRKPNVRFXGSTDWAKRHFGKVS*
JGI24004J15324_100111609	F083263	GAGG	MKKMTTMNDMFVAYQTHKGYAQQQNLEPIGFKEFIGIFMHFNSVVMHQSVAIYTAAKNSKVRKKQTKETIQ*