Scaffold JGI24004J15324_10000158

Overview

Basic Information

• Taxon OID: 3300001472
• Scaffold ID: JGI24004J15324_10000158
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-32
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26019
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (90.74%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.2833
  • Long. (^o): -134.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047922	Metagenome / Metatranscriptome	149	Y
F060355	Metagenome / Metatranscriptome	133	Y
F065219	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24004J15324_1000015835	F047922	AGGAG	MTPQEIVDHKRKWIMANYFESHTHTDLRSEVYSWCKEHCFQWRFDIKNFTDIYGDTVRFELKEDFDGFNEWYEEQWNEENLDNMEARSRIV*
JGI24004J15324_1000015849	F060355	GGAG	MKLKDDVREKWESGQYTIYDIAEEYCTTPEAVLRLLGLAEDPFSYELH*
JGI24004J15324_1000015851	F065219	GGAG	MKYDLQQNINTGNWWIVEQDETGYRTIVLTLSADLTRFEASKYLEKYIEEVKNGQNT*