Scaffold JGI20168J15290_1012830

Overview

Basic Information

• Taxon OID: 3300001466
• Scaffold ID: JGI20168J15290_1012830
• Source Dataset Name: Nasutitermes corniger midgut segment microbial community from laboratory colony in Florida, USA - Nc150M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 531
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: laboratory colony in Florida, USA
• Coordinates
  • Lat. (^o): 26.0625
  • Long. (^o): -80.2332

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000030	Metagenome	5002	Y
F030138	Metagenome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI20168J15290_10128301	F000030	GGAG	MHFYRVSQEECATLREGVSYVKVYRYNPKHLCPKLNGYRDNGQRK
JGI20168J15290_10128302	F030138	N/A	MNGVNNWLHNLAAPFFDEGLQKLVSRYDKCLNVDENYVEK*