Scaffold JGI20168J15290_1012242

Overview

Basic Information

• Taxon OID: 3300001466
• Scaffold ID: JGI20168J15290_1012242
• Source Dataset Name: Nasutitermes corniger midgut segment microbial community from laboratory colony in Florida, USA - Nc150M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 536
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Actiniaria → Edwardsiidae → Nematostella → Nematostella vectensis (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: laboratory colony in Florida, USA
• Coordinates
  • Lat. (^o): 26.0625
  • Long. (^o): -80.2332

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019493	Metagenome	229	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI20168J15290_10122421	F019493	GAG	LDWNPQGYRRRGRPKRMWRRTIEDEIRNTGRSWNEVKGIAGDRNAWKLFMDALCSIRSKRN*