Scaffold JGI24003J15210_10109720

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold JGI24003J15210_10109720

Scaffold JGI24003J15210_10109720

Overview

Basic Information
Taxon OID	3300001460 Open in IMG/M
Scaffold ID	JGI24003J15210_10109720 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-28
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	772
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	48.9699	Long. (^o)	-130.6666	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F067202	Metagenome	126	Y
F081883	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24003J15210_101097201	F081883	GAGG	MTPRIEKIYNLIYYSDFDEYELKQLAIGLLGTTLNDASWHETVDTVSSYKLSDEMELDF
JGI24003J15210_101097202	F067202	GGAG	MRYKDIVIAAEDLECHTIDTVAEAISEHIIDLDLATPETLTGFTWRLDVRMRMDNYDT*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.