Scaffold JGI24003J15210_10085738

Overview

Basic Information

• Taxon OID: 3300001460
• Scaffold ID: JGI24003J15210_10085738
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 939
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002747	Metagenome / Metatranscriptome	533	Y
F006347	Metagenome / Metatranscriptome	375	Y
F076487	Metagenome	118	Y
F086185	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24003J15210_100857381	F076487	N/A	DALYNLYEMKRETLAFNEGGNKYGYENLLDDTDFFTPVDFTDTYNVKGYTDEQVLEILGGFIQW*
JGI24003J15210_100857382	F006347	AGGAGG	MVDRIEQLMETLEQEINDGYNTLPDYETNNEGKTYVNSAQCTLYELQKQVLKLKQGLEQGKNFSLLGDNQNG*
JGI24003J15210_100857383	F002747	GGA	MAKDANRFFVNVCLEVYVPDQGCGDRAVVNENSDAEWFSNEICSQIPKLINKEWEHSERPYSVNWVHKGKVERG*
JGI24003J15210_100857384	F086185	GAGG	MTEPMITLGDLLEILSTDLTPTEIEAFLYEWGIA*