Scaffold JGI24003J15210_10002778

Overview

Basic Information

• Taxon OID: 3300001460
• Scaffold ID: JGI24003J15210_10002778
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7665
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002033	Metagenome / Metatranscriptome	601	Y
F029449	Metagenome / Metatranscriptome	188	N
F095562	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24003J15210_100027784	F029449	AGAAG	VASRVPIIPGVPTPSDPQCSLTYCGRIIAQVDCIKYIMQGTTACIDIQLFGSNDLPLNLNNFCDIHIQLTNELECVIANFWYPDIPSGSKGYLLDILQFTDTSGVIHNEGLIRICLSADCTKVSPGNVFAEILLTECGGGNTGDPTGVGPTGTLPTGSVEVYGIPCLWVATILESKINKNGGATGCGTGGFVTGVI*
JGI24003J15210_100027785	F002033	N/A	MSKFNNFFSTHGIKIVLVLLLLSYFKSCSIDSEVERIKKEQRILTTEIDTLSSQIVNKEEMIYLIKTVPAWKTLRIEEISDKERISINALEEKED*
JGI24003J15210_100027788	F095562	N/A	MEQTDDPNILRKQIDKIDNELNQLEKEKEVIQNDCKHKGDTFVQFDKSNSMKKYCSDCKRELGYPTKAEQEKFLGNKTEYGNS*