NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24003J15210_10000688

Scaffold JGI24003J15210_10000688


Overview

Basic Information
Taxon OID3300001460 Open in IMG/M
Scaffold IDJGI24003J15210_10000688 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14500
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (8.11%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001217Metagenome / Metatranscriptome745Y
F029758Metagenome / Metatranscriptome187Y
F059342Metagenome / Metatranscriptome134N
F093896Metagenome / Metatranscriptome106Y
F103885Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
JGI24003J15210_1000068811F029758AGGAGMIENDRLNAVEHIWYPESGRWIXIXXYASGYLGLNCMQGDEYEYFKKHWCEIDRGMSEFYSTMKSDLIALRAQMSELEFIDKVMWIYWKSKMNAERYKLIRSLADNINE*
JGI24003J15210_1000068812F029758N/AMRTNDRLNAVEHIWRAESDRWIYIERYASGYLGLNCMQGDEYEHFKIKWCEIDRGMSEFYNCMRTELIRLRVGMSELEFIDKVMWIYFESKVNVERYK*
JGI24003J15210_1000068816F001217N/AMSANKFNGFEKYFIQTALRHAIEEAEENIIELEREGKRSIYAPGYFTMVGYEIIDKVNSMTLKKHQD*
JGI24003J15210_1000068817F059342N/AMSTTKYNGYTEFHTWRVFHDTLSDIDFESKVTADELKEISLGVVLSNFDMERGSRLVEEYAELFVKLADFEDIADSINNDIR*
JGI24003J15210_1000068819F103885N/AMKTLLKQIKPKYVESIQSSDYTYSASRILAKLESTTFYGDLTITEIRDIYDMCGINALRVSAWDYRFGDNILLKDDE*
JGI24003J15210_100006889F093896N/AMNLTLSEKYLILVSLDHMEEHLFIIYEAGDITLDTFNLRMEVFKTAYNKIKKIC*
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