Scaffold JGI24003J15210_10000058

Overview

Basic Information

• Taxon OID: 3300001460
• Scaffold ID: JGI24003J15210_10000058
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42175
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (84.21%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020895	Metagenome / Metatranscriptome	221	N
F024442	Metagenome / Metatranscriptome	206	Y
F038472	Metagenome / Metatranscriptome	166	N
F046082	Metagenome / Metatranscriptome	152	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24003J15210_1000005842	F024442	AGGA	MKNSTATSGTSIDALVKEGKALGSIWRQVNSLKQTTKESGFDTRLGKLLQQLKASSTVDSGQIPTHVLRTHGIQQIDRRRRSEALWFVENEKECRQFIVDNKFKGSSLTALQAAMRKAAKADDADNSEAEPSNVGQSEATEQPKADAPKQRYSKTAIVNAVIAQAELNEVDLEEIINDLIEVLADRQTAAA*
JGI24003J15210_1000005848	F038472	AGGA	MRYEMQNFIKMTNKKPSNVGQKSTRDEWKRARKVARQTKLTLRKSVA*
JGI24003J15210_1000005851	F020895	N/A	MPTIKAYEIVLEIDGQESCITLDDTFPAIDSWASACSMAVLMAKHIHPSKEVEFVSCAEYEADEYADIGYVYDAPVVLQ*
JGI24003J15210_1000005852	F046082	AGGAG	MAANIKLTERMLNKSEINANKTVKQFLLDDFGMEYTDPFFTVGNKLTVVGEYIDGEEADINFFRRSGRGDTMLSIQKLKQYADAGNEVRLISDSESDGDGTRIFISVHSTGEETDAA*