Scaffold JGI24006J15134_10102290

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10102290
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1026
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001802	Metagenome / Metatranscriptome	632	Y
F007611	Metagenome / Metatranscriptome	348	Y
F025154	Metagenome	203	Y
F038864	Metagenome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_101022902	F038864	AGG	MKIDKKLIVAVLELYKLDIVNREIKEHDQSLELLIKVNEQIKLIKEWKK*
JGI24006J15134_101022904	F007611	N/A	MKKKWITVLDYETSRVYQYQVTINKHAEEFITFKGHRLSNIEWMEHSDSRLITN*
JGI24006J15134_101022905	F001802	N/A	MKTIKHLKNNYLQLDKLIYRPYTVCELPANFGCINFNEKEGISEWFNYKGYTYLFEKMAKS*
JGI24006J15134_101022906	F025154	N/A	MSPWDMVAELGIYTDEQIDEMTWAECEEIINQEE*