Scaffold JGI24006J15134_10085273

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10085273
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1170
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000126	Metagenome / Metatranscriptome	2021	Y
F015994	Metagenome / Metatranscriptome	250	Y
F042624	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_100852732	F042624	GAG	MKKITRCALGLAILFSSCAKEEGLLSRNWSSPNFENFNCNSPVMLGESGTVGFLPGDTDAQIVAKIKDVWNLPDHYVVFLDPETYSGNGGLRTARDINPEYLAFPLHISSMSDKWGHDYYEEYKRAVVIGKKQAFLDKYTGGKETGGMKICNL*
JGI24006J15134_100852733	F000126	GAG	LSYKLSIMKNKKTNTINMRDYSITRKKGEWYDARVVDSYGNKYQNYFEFAHEANDWIYYVWSKEDWFNSVDSQELLYNAIQQCKEIDNKSNRRVIL*
JGI24006J15134_100852734	F015994	N/A	MFKVKENDVFSKSMSNSELHKVWMKMKWKQEMDEWFVELQTKYNEEQENKYY*