NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24006J15134_10047202

Scaffold JGI24006J15134_10047202


Overview

Basic Information
Taxon OID3300001450 Open in IMG/M
Scaffold IDJGI24006J15134_10047202 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-53
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1785
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.5666Long. (o)-138.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000720Metagenome / Metatranscriptome923Y
F003020Metagenome / Metatranscriptome513Y
F004988Metagenome / Metatranscriptome416Y
F030928Metagenome184Y
F049295Metagenome147N
F083388Metagenome113N

Sequences

Protein IDFamilyRBSSequence
JGI24006J15134_100472021F049295N/AMSKEIVVEWIPEDTGAPYEIDMKDVIIDTPAHIVDKWCKKKFGHTNWARMGVMSPEELLGNPHE
JGI24006J15134_100472024F000720GAGGMTLSKENKTVRTEIPNRMMSATFTLPIDGRKVVGIVNYMASETGLTPLAFWVKLKPTDSYLDRELRASGKLLSRCLQHGEDLKELVDTLSQDNVIGQMANYLHKHIEEIIMGKQPDKRQRMLSTDPYAMKE*
JGI24006J15134_100472025F030928AGGTGGMKEWLKTLEAYISFCILGFTIFICVTVIIVNCRYIIKLENTIETMWHEIVQVKETNIGLYQFIEEHKNDFE*
JGI24006J15134_100472026F083388AGGAGGMVGLLMQNLSYEYKLRISNIESVMTRCNPEFKEVWARKLQQLLDRKVEIAHERMVEDARSVH*
JGI24006J15134_100472027F004988N/AMVKLVETICPRCDGNGYIKVQKEELDCPMCLEEFRHMGGVVTTNSGFVELPEDQTRLNVEGGRESITKWSGETLPQKGK*
JGI24006J15134_100472028F003020N/AMPDTSSFKSVSVSVGTYNQLKTLAENRFEVTVSIQKVIDFMLEKEIKKKNGKTR*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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