Scaffold JGI24006J15134_10038155

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10038155
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2053
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039871	Metagenome / Metatranscriptome	163	Y
F055275	Metagenome / Metatranscriptome	139	Y
F079342	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_100381552	F039871	AGGA	MIELRKFFEAYEGSPHQLAAIDQLADEMPDELLDKFCAWVECFEVDGEVQPLVEYSAKGYIIKEPWRYT*
JGI24006J15134_100381554	F079342	AGGAG	MTNIQVMSLKNAHHNMARARKELELARINDTHYRGVEYTPISATHETHGTFVYRGRTYTK
JGI24006J15134_100381555	F055275	AGG	MEQTELTFTMNERTIRALHSSVVFTLDKWAGQGELDQECLLGIKSSLQGCLFEFNFDRSPEE*