Scaffold JGI24006J15134_10026985

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10026985
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2566
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028039	Metagenome / Metatranscriptome	193	Y
F041493	Metagenome / Metatranscriptome	160	Y
F042628	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_100269851	F041493	N/A	FQVKMIESNEDHLYTTIYDSLSGDPFRVRTERVGYHLSFTKKRSRLEHKQLTTYGEAIPAFVKTKEEIIGSPLSSKADGVAPVSQVKVGKRRRGRRGKKK*
JGI24006J15134_100269852	F028039	AGGAG	MTILLDRWETIIKELKFDSRWAKIFEKYLEDNNLNELPEPDWSDDPTMAYIYLPARSLDGKNVRLDRTKARMFPENIVGYLEKGGFMKLPAKVEASKIEEQLPKMETEKPKREKIKLPKIGE*
JGI24006J15134_100269855	F042628	AGGA	MGKYNNSSNNNIFKEEPEISISEHTVVKNGRTMKMVIPDGKIGYGDTESHAQLAGDLATKHSDDTKAGQRVYEEVRKHRDSRERGTSVEQNRINMAQQKMAGRMPVIQSFNIVDPITKQVIAQDFLFMKTDRSGLTRPLKIRVDVQSGKTTEIPL*