Scaffold JGI24006J15134_10022758

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10022758
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2854
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047369	Metagenome	150	N
F090364	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_100227583	F090364	N/A	MKKLMTEWRNFLXEGKYEAATTEXTRKVIPHVKYIIDEVIPSDNVQNSRKDLILVIGKKYEXGKGLPKELEKEMYMAQFTFHIDKKLAEETGDKFQIGGMHMSDPYDRRDDYIKINSYFDIGFNEQDLNEYLGELKAVTIHEIQHGGQTTDVLDTAHPPKGPLNPLRWDYNKIDGIRGYYASDSETDTYTKEVYKRAKYHKVPYTEALDMRIKQFFDMFRRRRDKINAEDERETPGEYRVKYTEEELKDFFYNELRDKYIAFAKTKYPEAVGI*
JGI24006J15134_100227585	F047369	GGA	MKKLLTEWRQFVLTEGMKTAARLPQGSAIAIKSRGTNPMFVYTYGGKPLYDKPNPRFNPGVPEGAPWGEVLIGKLKPNSQGDCSDAYGIDHSETASGWGPLLYDVAMEWASRNGGGLTSDRGSVSKDAFRVWEYYLEKRPDVESVPLDIRNRGYEKITPDDESDDCEQAISVKYARDTNSDPKWGWSAQPTAYLYRVSGTPTMDALEASGQFLDQLEE*