Scaffold JGI24006J15134_10015241

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10015241
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3653
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044224	Metagenome / Metatranscriptome	155	Y
F048320	Metagenome	148	N
F056151	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_100152411	F044224	N/A	MKINKIIKSYKNSNMNKELLSYKLKKYYNLNEEERIHILYYI*
JGI24006J15134_100152413	F056151	N/A	MSNLKNLKTNHYISKILKIKKLKLKNNIYFGFLINDLQNIKLKDKLQIENVIEFNLKGLTFINKKYIQNSTLNNI*
JGI24006J15134_100152416	F048320	N/A	MKTLFATLLLILCYACGSIKGQAYIDINENIDYEYNEDLRYRARFKVGYKIYLGEKHTIKKEKI*