Scaffold JGI24006J15134_10008141

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10008141
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5280
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003693	Metagenome / Metatranscriptome	473	Y
F018479	Metagenome / Metatranscriptome	235	Y
F092017	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_100081413	F003693	AGG	MISKLALIDVSADNSNSLGVQTDGMLLCGIQFPAAMTGSAITFDFAMDNSTWLDVKETDGTAVSYTVSVGDVVRVDPSGWAFASNGYIRVTSNGNEAADREIVLHFRHS*
JGI24006J15134_100081414	F092017	AGGAG	MSMLLILKEGRNLNIESIPDQPLEPSFPIVNPNNTSNDGWFALGSFGQAIFATSLIEEGAA*
JGI24006J15134_100081415	F018479	AGGAG	MSQKISDLVNRVYREYLEPMDDLQSYTTLKTEVNATATEIVFDGDLLTQEEEDAMDAGTIIECEQELMRCKSLDTVNNTVTVARGVLGTTAAIHIVDKVIKIAPVFPRKNVFDAVCDQIKNLYPTLFAVETKSIVAKAGYVPLSGSTDNHLIAPIKSISQNTNFSAGSDETGTVFSGVSCELIDLPNPFTYTDDDGASQTITYSNNGPDNVKAIQFYSVASGHTVFVTFKKKFVTPTQEDDTLSTVGLEDEYEPIIMTGVAAQLISGRDIPTATADYITDQMSVNTFPVNSASTIRNSLLQYQTALITQARKDLRARYPEPVTINKIAYT*